Bos taurus (cow)
Crisetulus griseus (chinese hamster)
Danio rerio (zebrafish)
Gallus gallus (chicken)
Heterocephalus glaber (naked mole rat)
Hippoglossus hippoglossus (atlantic halibut)
Macaca fascicularis (crab-eating macaque)
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Macaca mulatta (rhesus macaque)
Mus musculus (mouse)
Oryctolagus cuniculus (rabbit)
Ovis aries (sheep)
Rattus norvegicus (rat)
Salmo salar (atlantic salmon)
Sus scrofa (wild boar)
Xenopus laevis (african clawed frog)
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References
[1] Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. [2] Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. [3] Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. [4] Jensen LJ, et al. STRING 8--a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 2009 Jan;37(Database issue): D412-6. Epub 2008 Oct 21. |
_[5] Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52.
[6] Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, Oct;52(5):696-704. [7] Anisimova M., Gascuel O. Approximate likelihood ratio test for branchs: A fast, accurate and powerful alternative. Syst Biol. 2006, Aug;55(4):539-52. [8] Di Tommaso P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM, Taly JF, Notredame C. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W13-7. Epub 2011 May 9. |